Estimate descriptive statistics

Estimate descriptive statistics

get_stats(m, per_chr = TRUE)

Arguments

m	methrix object
per_chr	Estimate stats per chromosome. Default TRUE

Value

data.table of summary stats

Details

Calculate descriptive statistics

See also

plot_stats

Examples

data('methrix_data')
get_stats(methrix_data)
#> -Finished in:  0.555s elapsed (0.547s cpu)
#>    Chromosome Sample_Name mean_meth median_meth   sd_meth mean_cov median_cov
#> 1:      chr21          C1  0.560004   0.6515152 0.4004019 4.745968          4
#> 2:      chr21          C2 0.4934995         0.5 0.3896208 5.047525          4
#> 3:      chr21          N1 0.5245418      0.6125 0.4205225 4.978682          4
#> 4:      chr21          N2 0.5333442   0.6666667 0.4227578 5.055662          5
#> 5:      chr22          C1 0.7392421   0.8571429 0.3115366 4.657459          4
#> 6:      chr22          C2 0.5778096   0.6515152 0.3678762      5.5          5
#> 7:      chr22          N1 0.8445557           1 0.2273115 5.505376          5
#> 8:      chr22          N2 0.8520698           1  0.220973 5.866667          5
#>      sd_cov
#> 1: 2.990217
#> 2: 3.294072
#> 3: 3.214882
#> 4: 3.148072
#> 5: 2.813423
#> 6: 3.046094
#> 7: 3.270255
#> 8: 3.166515