Extracts all CpGs from a genome

Extracts all CpGs from a genome

extract_CPGs(ref_genome = NULL)

Arguments

ref_genome

BSgenome object or name of the installed BSgenome package. Example: BSgenome.Hsapiens.UCSC.hg19

Value

a list of data.table containing number of CpG's and contig lengths

Examples

if (FALSE) {
hg19_cpgs = methrix::extract_CPGs(ref_genome = 'BSgenome.Hsapiens.UCSC.hg19')
}