Converts HDF5 scMethrix object to an in-memory scMethrix object.

Source: R/scmethrix_operations.R

Converts HDF5 scMethrix object to an in-memory scMethrix object.

convert_HDF5_scMethrix(scm = NULL, verbose = TRUE)

Arguments

scm

scMethrix; the single cell methylation experiment
verbose

boolean; Flag for outputting function status messages. Default = TRUE

Value

An object of class scMethrix

Details

Takes an HDF%-based scMethrix object and returns with the same object with in-memory assay slots.

Examples

data('scMethrix_data')
dir <- paste0(tempdir(),"/h5")
scm <- convert_scMethrix(scMethrix_data)

#> Converting in-memory scMethrix to HDF5
#> Converted in 0.38s
convert_HDF5_scMethrix(scm)

#> Converting HDF5 scMethrix to in-memory
#> Converted in 0.12s
#> An object of class scMethrix
#>    n_CpGs: 286
#>    n_samples: 4
#>    assays: score, counts
#>    reduced dims: 
#>    is_h5: FALSE
#>    Reference: hg19
#>    Physical size: 46.7 Kb